PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g27650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 423aa    MW: 47026.6 Da    PI: 5.0456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g27650genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.1e-0693113323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C+ Cgk Fs+   L  H+rtH
  CA02g27650  93 CKECGKEFSSLKALAGHLRTH 113
                 ********************9 PP

2zf-C2H215.74.3e-05122144123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++Cgk F +   L  H+++H
  CA02g27650 122 HICEKCGKGFASMRALFGHMKVH 144
                 68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.11591118IPR007087Zinc finger, C2H2
SMARTSM003550.04891113IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.34E-1092144No hitNo description
Gene3DG3DSA:3.30.160.601.1E-593115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
PfamPF139127.5E-893115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4119145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.593122149IPR007087Zinc finger, C2H2
PfamPF139128.4E-4122146IPR007087Zinc finger, C2H2
SMARTSM003559.9E-4122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576676.4E-5336364No hitNo description
PfamPF139122.1E-8340363IPR007087Zinc finger, C2H2
SMARTSM003551.4340362IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871340362IPR007087Zinc finger, C2H2
PROSITE patternPS000280342362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MRGHLALISA AKKQKDSSKV GSEEEEEEEA ANIHEDLSIS EQSESSTSQE KENNISIGDD  60
GDDSIGYGLR ENPRRSWRVS DFKNCSLEMK NLCKECGKEF SSLKALAGHL RTHSKKGIEK  120
CHICEKCGKG FASMRALFGH MKVHSKRSTG DDQDSELSKQ SLSDFDNICP IRKKRSKIKY  180
KIDVNSSFSG LNESSSAISE VDEVEEAARC LLMLSVGVRD WDEYISILES SKDENVNLES  240
EPSFHCAKGI SAADAFTVKH LSHAVFSDSG CVDDYEKNYE IAEFSDELML VNTEITKVCY  300
STDMQFENDP SSSVVMEEFP FLNSCSLKNA EVEPVKSKKH KCPVCFKVFP LGQSLGGHKR  360
AHYTGFTESK TKEPMVKKLD DLVDNHKAFD LNTPVNAVDV GENDVELKLW WVGSSDGLMM  420
SN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558513.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLK4BC220.0K4BC22_SOLLC; Uncharacterized protein
STRINGSolyc02g088670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-11C2H2-like zinc finger protein